BS(MIS) through hybrid distance learning program is being conducted by MIS Department. The BS(MIS) curriculum design is composed of several segments such as broad general education in Management Information Systems, Natural Sciences, Humanities, Economics, Finance, General Management and Information Technology.  The program is spread over 11 Semesters and consists of 130 Credit Hours covering 44 courses.

BS(MIS) Program at PNEC is accredited by National Computing Education accreditation Council (NCEAC). BS MIS Program is accredited up to Intake Batch-2019 as per decision of NCEAC Meeting dated 02 February 2017.​

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The program is being conducted in three phases:

1st Phase         –          1st to    3rd     Semesters at Pakistan Naval Academy

2nd Phase        –          4th to    6th     Semesters at Pakistan Naval Engineering College

3rd Phase        –          7th to 11th      Semesters through Distance Learning